# qiime_config
# WARNING: DO NOT EDIT OR DELETE /etc/qiime/qiime_config
# To overwrite defaults, copy this file to $HOME/.qiime_config or a path
# specified by $QIIME_CONFIG_FP and edit that copy of the file.

# This file refers to default GreenGenes data files installed by the qiime-data
# package.

cluster_jobs_fp
python_exe_fp	    python
working_dir	    .
blastmat_dir	    /usr/share/ncbi/data
blastall_fp	    blastall
pynast_template_alignment_fp	/usr/share/qiime/data/core_set_aligned.fasta.imputed
#template_alignment_lanemask_fp	/usr/share/qiime/data/lanemask_in_1s_and_0s
pynast_template_alignment_blastdb
jobs_to_start	    1
seconds_to_sleep    60
qiime_scripts_dir   /usr/lib/qiime/bin/
temp_dir	    /tmp

# Uncomment these to enable always re-training the RDP classifier, which is the
# default behaviour for QIIME 1.9.  This takes a lot of time and RAM, so
# for Bio-Linux the default behaviour is to quickly use the built-in index.
# If you are using another assignment method you may need to specify these settings
# in all cases.
assign_taxonomy_id_to_taxonomy_fp  # /usr/share/qiime/data/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
assign_taxonomy_reference_seqs_fp  # /usr/share/qiime/data/gg_13_8_otus/rep_set/97_otus.fasta
